VirMet: a set of tools for viral metagenomics
VirMet is a software suite designed to help users running viral metagenomics experiments: unspecific massively parallel sequencing with the aim of discovering and characterizing the virus fraction of biological samples.
virmet is now called with a command subcommand
syntax: virmet fetch --viral n
, for example, downloads the viral nucleotide
database. Other available subcommands so far are
fetch
: download genomesupdate
: update viral/bacterial databaseindex
: index genomeswolfpack
: analyze a Miseq runcovplot
: plot coverage for a specific organism
A short help is obtained with virmet <subcommand> -h
.
Further detail following the menu on the left.